Research interest

  • Text and strings processing algorithms
  • Simulation of nondeterministic finite automata
  • Exact and approximate pattern matching
  • Multiple string matching
  • Data compression
  • Pattern matching on compressed texts
  • Combinatorial algorithms on graphs
  • Privacy preserving text processing

Talks given

[18]

Efficient Matching of Biological Sequences Allowing for Non-Overlapping Inversions
22nd Annual Symposium on Combinatorial Pattern Matching (CPM 2011)

Palermo, Italy
Given on 27-29 June 2011

[17]

Compact Representations of Nondeterministic Automata for the Bit-Parallel Approach
London Stringology Days (LSD) & London Algorithmic Workshop (LAW) 2011

King's College, London, UK
Given on February 2011

[16]

Approximate String Matching Allowing for Inversions and Translocations
the Prague Stringology Conference 2010

Prague, Czech Republic
Given on Septempber 2010

[15]

A Space-Efficient Implementation of the Good-Suffix Heuristic
the Prague Stringology Conference 2010

Prague, Czech Republic
Given on September 2010

[14]

Bit-(Parallelism)^2: Getting to the Next Level of Parallelism
Fifth International Conference on Fun With Algorithms

Ischia, Italy
Given on June 2010

[13]

On the Bit-Parallel Simulation of the Nondeterministic Aho-Corasick Trie
London Stringology Days (LSD) & London Algorithmic Workshop (LAW) 2010

Ischia, Italy
Given on February 2010

[12]

Pattern Matching with Swaps for Short Patterns in Linear Time
35th International Conference on Current Trends in Theory and Practice of Computer Science

Spindleruv Mlyn, Czech Republic
Given on January 2009

[11]

A New Algorithm for Efficient Pattern Matching with Swaps
20th International Workshop on Combinatorial Algorithms

Hradec nad Moravicí, Czech Republic
Given on June 2009

[10]

Efficient Variants of the Backward-Oracle-Matching Algorithm
the 13th Prague Stringology Conference 2008

Prague, Czech Republic
Given on September 2008

[9]

New Efficient Bit-Parallel Algorithms for the Delta-Matching Problem with Alpha-Bounded Gaps
the 13th Prague Stringology Conference 2008

Prague, Czech Republic
Given on September 2008

[8]

A Space Efficient Bit-Parallel Algorithm for the Multiple String Matching Problem
University of Rouen

Rouen, France
Given on September 2007

[7]

A Space Efficient Bit-Parallel Algorithm for the Multiple String Matching Problem
the Prague Stringology Conference 2005

Prague, Czech Republic
Given on September 2005

[6]

Searching for a substring with constant extra space complexity
Third International Conference on FUN with Algorithms

Elba Island, Itlay
Given on May 2004

[5]

Two Levels Greedy: an improvement of the Dijkstra shortest path algorithm
Cologne-Twente Workshop on Graphs and Combinatorial Optimization

Milano, Itlay
Given on May 2004

[4]

Efficient Algorithms for the delta-Approximate String Matching Problem in Musical Sequences
the Prague Stringology Conference 2004

Prague, Czech Republic
Given on September, 2004

[3]

Fast-Search: a New Efficient Variant of the Boyer-Moore String Matching Algorithm
Second International Workshop on Experimental Algorithms

Ascona, Switzerland
Given on May 2003

[2]

Forward-Fast-Search: Another Fast Variant of the Boyer-Moore String Matching Algorithm
the Prague Stringology Conference 2003

Prague, Czech Republic
Given on September 2003

[1]

On the Frequency of Characters in Natural Language Texts
II AMAST Workshop On Language Processing

Verona, Italy
Given on August 2003