Publications

Journals

Alaimo, S., Giugno, R., Acunzo, M., Veneziano, D., Ferro, A., & Pulvirenti, A. (2016). Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification. Oncotarget 

Eduati, F., Mangravite, L. M., Wang, T., Tang, H., Bare, J. C., Huang, R., ... Alaimo S., ... & Zhan, X. (2015). Prediction of human population responses to toxic compounds by a collaborative competition. Nature biotechnology.

Nigita G, Alaimo S., Ferro A, Giugno R and Pulvirenti A (2015) Knowledge in the investigation of A-to-I RNA editing signals. Front. Bioeng. Biotechnol. 3:18. doi: 10.3389/fbioe.2015.00018

Alaimo S., Giugno R. and Pulvirenti A. (2014). ncRNA-Disease association prediction through tripartite network based inference. Front. Bioeng. Biotechnol. 2:71. doi: 10.3389/fbioe.2014.00071

Alaimo S., Bonnici V., Cancemi D., Ferro A., Giugno R., and Pulvirenti A. (2015). DT-Web: a web-based application for Drug-Target interaction and drug combination prediction through domain-tuned network-based inference. BMC Systems Biology, accepted.

Alaimo S., Pulvirenti A., Giugno R., and Ferro A. (2013). Drug–target interaction prediction through domain-tuned network-based inference. Bioinformatics, 29(16), 2004-2008.


Conferences

Alaimo S., Pulvirenti A., Giugno R., and Ferro A. TuNDRA: a Tripartite Network based Drug Repositioning Algorithm. BITS 2014.

Alaimo S., Bonnici V., Cancemi D., Ferro A., Giugno R., and Pulvirenti A.DT-Hybrid Web: a web-based application for Drug-Target interaction and drug combination prediction through domain-tuned network-based inference. BITS 2014.

Alaimo S., Pulvirenti A., Giugno R., and Ferro A. MITHrIL: Mirna enrIched paTHway Impact anaLysis. BITS 2013.